PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g026900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 271aa    MW: 30938.7 Da    PI: 7.6541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g026900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.4e-15133222198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  +k ++ ++tl de+ +++  k+   k++    l++GW++F  +++L +gD vvF+l+  + f  +v 
  Csa15g026900.1 133 FVKPMLQSHVTGGFWLGLPLRFCKTHL-PK-RDEMMTLVDEEDEEFVAKYLAAKTG----LSGGWRGFSIDHQLVDGDAVVFHLIAPTIF--KVY 219
                     89*********************9994.33.5569***************555555....***********************9986766..777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Csa15g026900.1 220 IIR 222
                     666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-19124223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-24126224IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-24131222No hitNo description
PROSITE profilePS5086310.983133224IPR003340B3 DNA binding domain
PfamPF023622.1E-13133222IPR003340B3 DNA binding domain
SMARTSM010195.1E-20133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVESELSYEQ IRLNRVEENK KRMGELNLSK LAQSLRVSSS PKPSPSKTRT MRTPVDFSEV  60
RRSSRAKGPP PSYKESYLDP YSQFGLEPLE RPRRSYQRRD LLNRVYASDE ARMYAVDKAE  120
TLQSSLDPEF PSFVKPMLQS HVTGGFWLGL PLRFCKTHLP KRDEMMTLVD EEDEEFVAKY  180
LAAKTGLSGG WRGFSIDHQL VDGDAVVFHL IAPTIFKVYI IRVNDDGNND SDGNEEDEEN  240
DIESNKKQEE NVSEARQLRS SGKRKRGGRK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936211e-144AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBankDQ4875611e-144DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487844.11e-178PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
SwissprotQ1G3M31e-146Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLR0I0401e-161R0I040_9BRAS; Uncharacterized protein
STRINGAT3G19184.11e-144(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-120B3 family protein